STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2389Oxidoreductase, molybdopterin-binding protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (760 aa)    
Predicted Functional Partners:
SPO2762
biotin--acetyl-CoA-carboxylase ligase; Identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121.
    
  0.900
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
  0.900
SPO1795
Formate dehydrogenase, iron-sulfur subunit, putative; Identified by similarity to SP:P27273; match to protein family HMM PF00037.
 
 
 0.789
SPO2388
Translocator protein, LysE family; Identified by similarity to SP:P27847; match to protein family HMM PF01810.
       0.773
soeB
Sulfite dehydrogenase iron-sulfur cluster-binding subunit SoeB; Identified by match to protein family HMM PF00037.
  
 
 0.762
SPO2387
Oxidoreductase, FAD-binding protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
     
 0.701
SPO2385
Benzaldehyde lyase, putative; Identified by similarity to SP:P51853; match to protein family HMM PF00205; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
  
    0.692
SPO2386
Hypothetical protein; Identified by similarity to GB:AAM35187.1.
       0.684
SPO2383
Membrane protein, putative.
       0.649
SPO2384
Identified by match to protein family HMM PF01970.
       0.649
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.