STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxFCarbon monoxide dehydrogenase F protein; Identified by similarity to GB:CAB76248.1; match to protein family HMM PF02625. (260 aa)    
Predicted Functional Partners:
coxM
Carbon monoxide dehydrogenase, medium subunit; Identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450.
 
  
 0.952
coxE
Carbon monoxide dehydrogenase E protein; Identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762.
 
     0.948
coxL-2
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19919; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
  
 0.937
coxS-2
Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
  
 0.928
coxC
Carbon monoxide dehydrogenase operon C protein; Identified by similarity to GB:CAB76246.1; match to protein family HMM PF03707.
 
     0.868
coxD
Carbon monoxide dehydrogenase D protein; Identified by similarity to GB:CAA57830.1.
 
     0.850
SPO2393
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.694
coxS-1
Carbon-monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
  
 0.624
SPO1627
Hypothetical protein.
 
  
 0.624
SPO2881
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
  
 0.565
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.