STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxDCarbon monoxide dehydrogenase D protein; Identified by similarity to GB:CAA57830.1. (300 aa)    
Predicted Functional Partners:
coxE
Carbon monoxide dehydrogenase E protein; Identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762.
 
   
 0.950
coxL-2
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19919; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.890
coxM
Carbon monoxide dehydrogenase, medium subunit; Identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450.
 
   
 0.853
coxF
Carbon monoxide dehydrogenase F protein; Identified by similarity to GB:CAB76248.1; match to protein family HMM PF02625.
 
     0.851
SPO2393
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
 
     0.776
SPO2644
VWA domain containing CoxE-like family protein; Identified by match to protein family HMM PF05762.
 
   
 0.748
coxS-2
Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799.
     
 0.699
coxL-1
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19913; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
   
 0.635
coxC
Carbon monoxide dehydrogenase operon C protein; Identified by similarity to GB:CAB76246.1; match to protein family HMM PF03707.
 
     0.558
SPO1520
Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.
 
   
 0.551
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.