STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
coxS-2Carbon monoxide dehydrogenase, small subunit; Identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799. (164 aa)    
Predicted Functional Partners:
coxL-2
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19919; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.997
coxM
Carbon monoxide dehydrogenase, medium subunit; Identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450.
 
 0.996
SPO2881
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.992
SPO0831
Xanthine dehydrogenase family protein, medium subunit; Identified by match to protein family HMM PF00941.
 
 0.990
coxL-1
Carbon monoxide dehydrogenase, large subunit; Identified by similarity to SP:P19913; match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.990
SPO3019
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
 0.990
xdhB
Xanthine dehydrogenase, B subunit; Identified by similarity to GB:CAA04470.2.
     0.955
coxF
Carbon monoxide dehydrogenase F protein; Identified by similarity to GB:CAB76248.1; match to protein family HMM PF02625.
 
  
 0.928
SPO2827
Isoquinoline 1-oxidoreductase, beta subunit, putative; Identified by similarity to SP:Q51698; match to protein family HMM PF02738; match to protein family HMM TIGR01409.
 
 0.894
SPO1520
Carbon monoxide dehydrogenase, medium subunit, putative; Identified by similarity to SP:P19920; match to protein family HMM PF00941.
 
 0.814
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.