close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2409Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)    
Predicted Functional Partners:
SPO2421
Hypothetical protein; Identified by similarity to PIR:B96013.
    0.840
SPO2410
Dihydroxy-acid dehydratase, putative; Identified by similarity to SP:P51785; match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
     0.811
SPO2413
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
  
0.623
SPO2412
Aldolase, putative; Identified by similarity to GB:BAB21456.3.
 
     0.582
SPO2411
Hypothetical protein; Identified by Glimmer2; putative.
       0.567
SPO2692
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
  
 0.468
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
     0.456
gltA
Citrate synthase I; Identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798; Belongs to the citrate synthase family.
 
    0.416
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.