Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2415Identified by match to protein family HMM PF05721. (304 aa)    
Predicted Functional Partners:
SPO2418
Transporter, LysE family; Identified by match to protein family HMM PF01810.
 
     0.778
SPO2414
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.773
SPO2416
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
 
     0.766
SPO3021
Identified by match to protein family HMM PF05721.
  
     0.704
idnO
Gluconate 5-dehydrogenase; Identified by similarity to SP:P39345; match to protein family HMM PF00106.
 
 
 0.601
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
    0.515
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
  
     0.455
SPO1449
Identified by match to protein family HMM PF00501.
  
  
 0.449
SPO2419
Hypothetical protein; Identified by similarity to GB:CAB55723.1.
 
     0.442
SPO2432
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
     0.440
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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