STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnOGluconate 5-dehydrogenase; Identified by similarity to SP:P39345; match to protein family HMM PF00106. (253 aa)    
Predicted Functional Partners:
SPO2421
Hypothetical protein; Identified by similarity to PIR:B96013.
 
 
 
 0.623
SPO2418
Transporter, LysE family; Identified by match to protein family HMM PF01810.
 
     0.616
SPO2416
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
 
   
 0.615
SPO2415
Identified by match to protein family HMM PF05721.
 
 
 0.601
idnD
L-idonate 5-dehydrogenase; Identified by similarity to SP:P39346; match to protein family HMM PF00107.
 
  
 0.542
SPO2414
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
 0.534
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
  
     0.519
SPO2419
Hypothetical protein; Identified by similarity to GB:CAB55723.1.
     0.481
SPO2431
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
  
     0.458
SPO2432
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
  
    0.439
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.