Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
idnDL-idonate 5-dehydrogenase; Identified by similarity to SP:P39346; match to protein family HMM PF00107. (349 aa)    
Predicted Functional Partners:
aroE-2
Shikimate 5-dehydrogenase/quinate 5-dehydrogenase family protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.763
SPO2423
Hypothetical protein; Identified by similarity to SP:O58489.
       0.741
SPO2422
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.691
SPO1720
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
    0.651
SPO0791
M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.
  
 
 0.586
idnO
Gluconate 5-dehydrogenase; Identified by similarity to SP:P39345; match to protein family HMM PF00106.
 
  
 0.542
SPO1889
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
 
0.470
SPO1722
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
   
 0.439
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
  
 0.429
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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