STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2427Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (240 aa)    
Predicted Functional Partners:
SPO2413
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
  
 
0.922
SPO2430
Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.
 
   
 0.863
SPO2426
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
     0.805
SPO2429
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
 0.796
SPO2428
6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446.
  
  
 0.778
SPO2431
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
     0.656
SPO2432
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
    0.655
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.527
SPO0795
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to PIR:E83152; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.499
SPO2435
Identified by match to protein family HMM PF01557.
 
 0.453
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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