STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2429Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894. (354 aa)    
Predicted Functional Partners:
SPO2426
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
     0.815
SPO2428
6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446.
 
     0.811
SPO2430
Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.
 
     0.806
SPO2427
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
  
 0.796
SPO2432
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
     0.775
SPO2431
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
     0.693
SPO2412
Aldolase, putative; Identified by similarity to GB:BAB21456.3.
 
   
 0.653
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.583
SPO2421
Hypothetical protein; Identified by similarity to PIR:B96013.
 
  
 0.532
SPO1295
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.504
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.