STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2433TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480. (390 aa)    
Predicted Functional Partners:
SPO2431
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
  
 0.875
SPO2432
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
    0.860
SPO2418
Transporter, LysE family; Identified by match to protein family HMM PF01810.
  
     0.744
SPO2426
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
     0.726
SPO2434
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.712
SPO2421
Hypothetical protein; Identified by similarity to PIR:B96013.
  
   
 0.647
SPO1456
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.612
SPO2429
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
     0.582
SPO1719
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.559
SPO0736
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.553
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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