SPO2434 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2434

Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (235 aa)

Predicted Functional Partners:

SPO3621

0.726

SPO2433

0.712

SPO2435

0.652

SPO2432

0.531

SPO2426

0.456

SPO2431

0.443

SPO2430

0.424

SPO1553

0.413

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO1553	SPO2434	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.413
SPO2426	SPO2430	Membrane protein, putative; Identified by match to protein family HMM PF00892.	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	0.773
SPO2426	SPO2431	Membrane protein, putative; Identified by match to protein family HMM PF00892.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	0.715
SPO2426	SPO2432	Membrane protein, putative; Identified by match to protein family HMM PF00892.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.843
SPO2426	SPO2433	Membrane protein, putative; Identified by match to protein family HMM PF00892.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.726
SPO2426	SPO2434	Membrane protein, putative; Identified by match to protein family HMM PF00892.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.456
SPO2430	SPO2426	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	Membrane protein, putative; Identified by match to protein family HMM PF00892.	0.773
SPO2430	SPO2431	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	0.651
SPO2430	SPO2432	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.653
SPO2430	SPO2433	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.493
SPO2430	SPO2434	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.424
SPO2430	SPO2435	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	Identified by match to protein family HMM PF01557.	0.425
SPO2431	SPO2426	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	Membrane protein, putative; Identified by match to protein family HMM PF00892.	0.715
SPO2431	SPO2430	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	0.651
SPO2431	SPO2432	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	0.947
SPO2431	SPO2433	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.	0.875
SPO2431	SPO2434	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.443
SPO2432	SPO2426	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	Membrane protein, putative; Identified by match to protein family HMM PF00892.	0.843
SPO2432	SPO2430	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.	0.653
SPO2432	SPO2431	TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.	TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.	0.947

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Textmining

Co-occurrence

Experiments

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About