Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2438Identified by match to protein family HMM PF05721. (295 aa)    
Predicted Functional Partners:
SPO2437
Identified by match to protein family HMM PF01177.
       0.773
SPO2436
FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
   
   0.668
SPO2440
Metallopeptidase, family M24; Identified by match to protein family HMM PF00557.
  
  
 0.490
SPO2439
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
    0.474
SPO1449
Identified by match to protein family HMM PF00501.
  
  
 0.449
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
    0.448
SPO2544
Identified by match to protein family HMM PF04909.
  
     0.429
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
      
 0.409
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.408
SPO2441
Glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.
 
     0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.