Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2439Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (255 aa)    
Predicted Functional Partners:
SPO2440
Metallopeptidase, family M24; Identified by match to protein family HMM PF00557.
       0.773
SPO1369
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
   
 0.740
hutC
Histidine utilization repressor; Identified by match to protein family HMM PF00392.
  
   
 0.690
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by similarity to SP:P15300; match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
  
 0.609
SPO2438
Identified by match to protein family HMM PF05721.
  
    0.474
SPO2437
Identified by match to protein family HMM PF01177.
       0.462
SPO1553
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.446
SPO1912
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.443
SPO2441
Glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.
       0.442
pdhR
Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392.
  
  
 0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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