Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2440Metallopeptidase, family M24; Identified by match to protein family HMM PF00557. (384 aa)    
Predicted Functional Partners:
SPO2437
Identified by match to protein family HMM PF01177.
 
     0.874
SPO2450
Identified by match to protein family HMM PF01177.
 
     0.776
SPO2439
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.773
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.652
SPO0168
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
   
 0.629
SPO1698
Identified by match to protein family HMM PF01177.
 
     0.566
SPO0566
Transcriptional regulator, TetR family.
  
   
 0.549
SPO2438
Identified by match to protein family HMM PF05721.
  
  
 0.490
SPO2436
FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
  
 
 0.487
SPO0725
Bacterial SH3 domain family protein.
 
     0.452
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.