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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2440Metallopeptidase, family M24; Identified by match to protein family HMM PF00557. (384 aa)    
Predicted Functional Partners:
SPO2437
Identified by match to protein family HMM PF01177.
 
     0.874
SPO2450
Identified by match to protein family HMM PF01177.
 
     0.776
SPO2439
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.773
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.652
SPO0168
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
   
 0.633
SPO1698
Identified by match to protein family HMM PF01177.
 
     0.566
SPO0566
Transcriptional regulator, TetR family.
  
   
 0.553
SPO2436
FAD dependent oxidoreductase/aminomethyl transferase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; Belongs to the GcvT family.
  
 
 0.530
SPO2438
Identified by match to protein family HMM PF05721.
  
  
 0.490
SPO2196
Diaminopropionate ammonia-lyase; Identified by similarity to SP:P40817; match to protein family HMM PF00291; match to protein family HMM TIGR01747.
 
  
 0.455
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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