STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2443Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005. (353 aa)    
Predicted Functional Partners:
SPO2442
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P14176; match to protein family HMM PF00528.
 0.996
SPO2441
Glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.
 
 0.992
SPO1133
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P14176; match to protein family HMM PF00528.
 0.984
SPO1550
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P46921; match to protein family HMM PF00528.
 0.984
SPO1131
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.
 
 0.978
SPO1548
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.
 
 0.969
SPO1132
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
  
  
 
0.909
SPO1549
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
  
  
 
0.909
SPO3847
ABC transporter, ATP-binding protein; Identified by similarity to GB:CAD16663.1; match to protein family HMM PF00005.
 
    
0.841
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.591
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.