STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2448Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427. (206 aa)    
Predicted Functional Partners:
SPO2446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.779
SPO2447
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.773
SPO2449
Hypothetical protein.
       0.750
SPO2445
Drug resistance transporter, Bcr/CflA subfamily; Identified by match to protein family HMM TIGR00710.
     
 0.590
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.533
SPO2450
Identified by match to protein family HMM PF01177.
 
     0.528
ccpA
Cytochrome c peroxidase; Identified by similarity to SP:P14532; match to protein family HMM PF03150.
      0.462
SPO0218
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
    0.418
SPO1922
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
    0.418
SPO3437
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
  
    0.418
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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