Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2459Hypothetical protein; Identified by similarity to PIR:H98216. (236 aa)    
Predicted Functional Partners:
SPO3375
Hypothetical protein; Identified by similarity to GB:BAB50839.1.
  
     0.734
ntrY
Nitrogen regulation protein ntrY; Identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
     0.686
SPO3872
Hypothetical protein; Identified by similarity to GB:AAM48721.1.
  
     0.662
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.637
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.613
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.524
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.518
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.474
SPO3780
Membrane protein, putative; Identified by match to protein family HMM PF03739.
  
     0.467
SPO0425
MORN repeat protein; Identified by match to protein family HMM PF02493.
  
     0.466
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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