STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2473Haloacid dehalogenase, type II, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493. (253 aa)    
Predicted Functional Partners:
SPO3822
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509.
  
  
  0.911
SPO0097
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.901
aasadh
Alpha-aminoadipic semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.901
SPO3368
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 
 0.901
SPO3382
Identified by match to protein family HMM PF00171.
  
 
 0.901
SPO2472
Hypothetical protein; Identified by similarity to GB:BAC45440.1.
       0.773
SPO3222
Hypothetical protein; Identified by similarity to PIR:T45023.
 
 
    0.698
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.488
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.485
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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