STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2486Hypothetical protein; Identified by similarity to GB:AAL49478.1. (300 aa)    
Predicted Functional Partners:
SPO2487
3-hydroxyacyl-CoA dehydrogenase, type II; Identified by similarity to SP:O02691; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.682
SPO3460
Hypothetical protein; Identified by similarity to PIR:E98268.
  
     0.562
SPO2485
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
SPO0204
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.532
SPO2027
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.501
SPO0198
ABC transporter, ATP-binding protein, flagellar, putative.
  
     0.448
fliE
Flagellar hook-basal body complex protein FliE, putative; Identified by similarity to SP:P24502.
  
 
   0.447
SPO0725
Bacterial SH3 domain family protein.
  
     0.438
SPO0202
Hypothetical protein; Identified by similarity to PIR:E83956.
  
     0.417
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.409
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.