STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO24873-hydroxyacyl-CoA dehydrogenase, type II; Identified by similarity to SP:O02691; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)    
Predicted Functional Partners:
SPO2486
Hypothetical protein; Identified by similarity to GB:AAL49478.1.
       0.682
SPO0880
Hypothetical protein; Identified by similarity to PIR:T36459.
  
  
 0.544
SPO2485
Hypothetical protein; Identified by Glimmer2; putative.
       0.500
SPO1015
3-hydroxybutyrate dehydrogenase, putative; Identified by similarity to SP:O86034; match to protein family HMM PF00106.
  
     0.492
SPO3647
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
 0.460
fabI-1
Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106.
 
  
 0.425
mccB
methylcrotonyl-CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039.
 
 
 0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.