STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2489Hypothetical protein; Identified by similarity to GB:BAC75021.1. (263 aa)    
Predicted Functional Partners:
SPO1979
Acyltransferase, putative; Identified by match to protein family HMM PF01553.
 
  
 0.947
SPO2490
Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355.
 
     0.822
SPO2491
Hypothetical protein; Identified by similarity to GB:BAB54306.1.
 
     0.718
SPO2488
ABC transporter, ATP-binding protein; Identified by similarity to SP:P43672; match to protein family HMM PF00005.
       0.621
SPO1007
Identified by match to protein family HMM PF02470.
  
     0.514
SPO3726
Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.
  
     0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.