Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO2490Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355. (155 aa)    
Predicted Functional Partners:
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.903
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.878
SPO2489
Hypothetical protein; Identified by similarity to GB:BAC75021.1.
 
     0.792
SPO2491
Hypothetical protein; Identified by similarity to GB:BAB54306.1.
 
    0.784
SPO2329
PQQ enzyme repeat family protein; Identified by match to protein family HMM PF01011.
  
 
 
 0.782
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
     0.763
SPO3431
Hypothetical protein; Identified by similarity to GB:AAK25710.1.
  
     0.750
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
  
     0.715
SPO2452
DNA polymerase III, chi subunit, putative; Identified by match to protein family HMM PF04364.
  
     0.679
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.675
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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