STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2506Iron-sulfur cluster assembly family protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family. (107 aa)    
Predicted Functional Partners:
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
  
 0.884
SPO2505
Deoxyguanosinetriphosphate triphosphohydrolase, putative; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.778
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
 
  
 0.772
SPO1868
Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.714
SPO1108
DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226.
  
 
 0.690
argS
arginyl-tRNA synthetase; Identified by similarity to SP:P46906; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
     
 0.632
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.618
SPO0382
nifU domain protein; Identified by match to protein family HMM PF01106.
  
 
 0.613
sucA
2-oxoglutarate dehydrogenase, E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239.
  
   
 0.584
SPO1246
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
 
 0.579
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.