Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2507Membrane protein, putative; Identified by match to protein family HMM PF00892. (297 aa)    
Predicted Functional Partners:
SPO1322
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.615
SPO0228
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.548
SPO2923
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.522
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.508
SPO2514
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
SPO2849
BolA protein, truncation; Identified by similarity to SP:P15298; match to protein family HMM PF01722; Belongs to the BolA/IbaG family.
  
     0.466
SPO2166
Lipoprotein, putative.
  
     0.462
SPO2580
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.454
SPO2650
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
  
     0.426
SPO1080
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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