STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2514Hypothetical protein; Identified by Glimmer2; putative. (55 aa)    
Predicted Functional Partners:
SPO2515
Hypothetical protein; Identified by similarity to GB:BAB50733.1.
       0.836
SPO2513
Hypothetical protein; Identified by similarity to GB:CAE27057.1.
 
     0.832
SPO0021
Hpt domain protein; Identified by match to protein family HMM PF01627.
  
     0.588
SPO2598
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.567
SPO2580
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.535
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.528
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.522
SPO3460
Hypothetical protein; Identified by similarity to PIR:E98268.
  
     0.504
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.503
SPO2512
ATPase, AAA family; Identified by similarity to GB:CAA57830.1; match to protein family HMM PF00004.
       0.485
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.