STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2517Peptidase, M48 family; Identified by match to protein family HMM PF01435. (228 aa)    
Predicted Functional Partners:
SPO2518
Identified by match to protein family HMM PF00296.
       0.776
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.708
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.650
SPO0373
Helicase, ATP-dependent, putative.
 
     0.567
SPO1103
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.548
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.
  
     0.502
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.496
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.491
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.483
SPO1931
Acyl carrier protein, putative; Identified by similarity to SP:P20804; match to protein family HMM PF00550.
  
     0.471
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.