Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2522Hypothetical protein; Identified by Glimmer2; putative. (91 aa)    
Predicted Functional Partners:
glnE
Glutamate-ammonia ligase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transd [...]
  
    0.845
SPO2351
Hypothetical protein; Identified by similarity to GB:BAB48126.1; match to protein family HMM PF06945.
  
     0.727
SPO1861
Hypothetical protein; Identified by similarity to GB:BAB48658.1.
  
     0.723
SPO1862
metFprotein-like protein; Identified by similarity to PIR:B97532.
  
     0.700
SPO2162
Hypothetical protein; Identified by similarity to GB:BAB48654.1.
  
     0.681
SPO2524
YbaK/prolyl-tRNA synthetases domain protein; Identified by match to protein family HMM PF04073.
       0.680
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
     0.679
SPO1265
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.643
SPO1024
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.604
SPO2108
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.596
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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