Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2528AMP-binding enzyme; Identified by match to protein family HMM PF00501. (571 aa)    
Predicted Functional Partners:
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 0.893
SPO2530
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
    0.777
SPO2535
Identified by match to protein family HMM PF00850.
  
  0.776
SPO2529
Hypothetical protein; Identified by similarity to GB:BAB49910.1.
       0.773
SPO2531
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SPO2532
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
  
    0.773
SPO2533
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005.
       0.773
SPO2534
Assignment partly based on membership in an branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409.
       0.773
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
 
  
0.767
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
   
   0.656
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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