Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2535Identified by match to protein family HMM PF00850. (371 aa)    
Predicted Functional Partners:
SPO2528
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  0.776
SPO2534
Assignment partly based on membership in an branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409.
 
     0.763
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
   
 
 0.729
SPO2530
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
    0.724
SPO2529
Hypothetical protein; Identified by similarity to GB:BAB49910.1.
       0.723
SPO2531
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.723
SPO2532
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
       0.723
SPO2533
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005.
       0.723
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.638
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
   
 0.633
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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