STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2535Identified by match to protein family HMM PF00850. (371 aa)    
Predicted Functional Partners:
SPO2534
Assignment partly based on membership in an branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409.
 
     0.763
SPO2528
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
   0.744
SPO2530
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
    0.724
SPO2529
Hypothetical protein; Identified by similarity to GB:BAB49910.1.
       0.723
SPO2531
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.723
SPO2532
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
       0.723
SPO2533
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21629; match to protein family HMM PF00005.
       0.723
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
   
   0.595
SPO3597
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01593.
   
 0.534
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.530
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.