STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2544Identified by match to protein family HMM PF04909. (301 aa)    
Predicted Functional Partners:
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
     0.641
SPO2414
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.637
SPO2419
Hypothetical protein; Identified by similarity to GB:CAB55723.1.
 
   
 0.612
SPO2545
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
       0.598
atsA
Arylsulfatase; Identified by similarity to SP:P51691; match to protein family HMM PF00884.
  
     0.511
SPO2547
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.500
SPO2546
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
       0.495
SPO2435
Identified by match to protein family HMM PF01557.
 
     0.439
SPO2438
Identified by match to protein family HMM PF05721.
  
     0.429
SPO2430
Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.
 
   
 0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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