STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2549Identified by match to protein family HMM PF01636. (343 aa)    
Predicted Functional Partners:
SPO2538
acyl-CoA dehydrogenase famiy protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.980
SPO0879
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 0.978
SPO2548
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
   0.890
SPO2211
acyl-CoA dehydrogenase; Identified by similarity to SP:Q9UKU7; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
 
 
 0.780
SPO2698
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
 
 0.751
SPO2547
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.540
SPO2546
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
       0.537
SPO1963
Identified by match to protein family HMM PF00300.
 
    0.481
SPO3013
NADP-dependent oxidoreductase, L4bD family; Identified by match to protein family HMM PF00107.
 
    0.477
SPO1972
Nodulation protein N; Identified by similarity to SP:P25200; match to protein family HMM PF01575.
 
 
 0.475
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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