SPO2555 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO2555

Hypothetical protein; Identified by similarity to GB:CAE35155.1. (221 aa)

Predicted Functional Partners:

SPO2554

0.885

SPO2552

0.863

SPO2550

0.852

SPO2556

0.812

SPO2551

0.784

SPO2553

0.784

SPO3682

0.478

SPO3680

0.445

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SPO2550	SPO2551	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.912
SPO2550	SPO2552	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	0.949
SPO2550	SPO2553	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.918
SPO2550	SPO2554	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.894
SPO2550	SPO2555	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	Hypothetical protein; Identified by similarity to GB:CAE35155.1.	0.852
SPO2550	SPO2556	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.496
SPO2551	SPO2550	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.912
SPO2551	SPO2552	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	0.871
SPO2551	SPO2553	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.963
SPO2551	SPO2554	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.914
SPO2551	SPO2555	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	Hypothetical protein; Identified by similarity to GB:CAE35155.1.	0.784
SPO2551	SPO2556	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.448
SPO2552	SPO2550	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.949
SPO2552	SPO2551	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.871
SPO2552	SPO2553	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.983
SPO2552	SPO2554	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.	0.948
SPO2552	SPO2555	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein; Identified by similarity to GB:CAE35155.1.	0.863
SPO2552	SPO2556	Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.	N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879.	0.573
SPO2553	SPO2550	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.918
SPO2553	SPO2551	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.963

page 1 of 3

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About