STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2556N-carbamyl-L-amino acid amidohydrolase, putative; Identified by similarity to SP:P37113; match to protein family HMM PF01546; match to protein family HMM TIGR01879. (409 aa)    
Predicted Functional Partners:
SPO0872
Polysaccharide deacetylase family protein.
   
 0.931
SPO0876
Hypothetical protein; Identified by similarity to GB:BAB51632.1; match to protein family HMM PF06038.
  
 
 0.916
SPO2555
Hypothetical protein; Identified by similarity to GB:CAE35155.1.
 
     0.812
SPO2554
Peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
 
     0.643
hydA
D-hydantoinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.
 
  
 0.590
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.573
SPO2553
Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.
 
     0.534
SPO2196
Diaminopropionate ammonia-lyase; Identified by similarity to SP:P40817; match to protein family HMM PF00291; match to protein family HMM TIGR01747.
 
  
 0.520
SPO2550
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
     0.496
SPO2551
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
       0.448
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.