STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnlGluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758. (318 aa)    
Predicted Functional Partners:
xylG
Xylose ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.946
galM
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
  
 0.854
fucA
L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.
 
  
 0.841
SPO2563
Hydroxypyruvate isomerase, putative; Identified by similarity to SP:P30147; Belongs to the hyi family.
 
  
 0.824
SPO2561
ygbK domain protein; Identified by match to protein family HMM PF07005.
 
   
 0.812
garR
2-hydroxy-3-oxopropionate reductase; Identified by similarity to SP:P23523; match to protein family HMM PF03446.
     
 0.788
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 
 0.717
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
  
  
 0.671
SPO2419
Hypothetical protein; Identified by similarity to GB:CAB55723.1.
 
   
 0.654
SPO2410
Dihydroxy-acid dehydratase, putative; Identified by similarity to SP:P51785; match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
   
 0.648
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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