STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2563Hydroxypyruvate isomerase, putative; Identified by similarity to SP:P30147; Belongs to the hyi family. (251 aa)    
Predicted Functional Partners:
SPO2561
ygbK domain protein; Identified by match to protein family HMM PF07005.
 
  
 0.934
fucA
L-fuculose phosphate aldolase; Identified by similarity to SP:P11550; match to protein family HMM PF00596.
 
  
 0.925
garR
2-hydroxy-3-oxopropionate reductase; Identified by similarity to SP:P23523; match to protein family HMM PF03446.
 
  
 0.885
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
 
    0.826
nuoC
NADH-quinone oxidoreductase, C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
 
      0.699
SPO0140
Hypothetical protein; Identified by similarity to PIR:E83277; match to protein family HMM PF06938.
 
     0.521
SPO2416
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
 
  
 0.413
SPO2421
Hypothetical protein; Identified by similarity to PIR:B96013.
 
    0.408
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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