Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2567Hypothetical protein; Identified by similarity to GB:CAE26557.1. (149 aa)    
Predicted Functional Partners:
SPO2568
RDD family protein; Identified by match to protein family HMM PF06271.
 
    0.855
SPO3896
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.781
ate
arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.638
SPO2570
Identified by match to protein family HMM PF00903.
       0.515
SPO1766
Hypothetical protein; Identified by similarity to GB:CAA06860.1.
  
     0.482
SPO3142
Hypothetical protein; Identified by similarity to GB:CAC46385.1.
  
    0.470
SPO3140
Putative protein TIGR01620; Identified by similarity to GB:BAB48295.1; match to protein family HMM TIGR01620.
  
     0.462
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.438
SPO1376
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF05157.
  
    0.408
SPO1177
Hypothetical protein; Identified by similarity to GB:BAB50586.1; match to protein family HMM PF06568.
  
     0.402
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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