STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2568RDD family protein; Identified by match to protein family HMM PF06271. (145 aa)    
Predicted Functional Partners:
SPO2567
Hypothetical protein; Identified by similarity to GB:CAE26557.1.
 
    0.855
ate
arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
     
 0.789
SPO1418
S4 domain protein; Identified by match to protein family HMM PF01479.
  
    0.708
SPO2570
Identified by match to protein family HMM PF00903.
  
    0.669
SPO2985
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.611
SPO0393
Identified by match to protein family HMM PF01694.
 
     0.575
SPO2513
Hypothetical protein; Identified by similarity to GB:CAE27057.1.
  
     0.566
SPO2016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.560
SPO0304
Lipoprotein, putative.
  
     0.542
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.541
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.