STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2571TRAP transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808. (784 aa)    
Predicted Functional Partners:
SPO2572
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.950
SPO2573
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.869
SPO1739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.766
SPO2574
Sensor histidine kinase; Identified by similarity to SP:P13799; match to protein family HMM PF02518.
 
     0.637
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
     0.530
SPO2575
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.518
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
  
 0.468
SPO0941
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.455
SPO1815
TRAP dicarboxylate transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
  
 0.409
SPO2058
Hypothetical protein; Identified by similarity to GB:BAC89701.1.
  
     0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.