STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2573Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (361 aa)    
Predicted Functional Partners:
SPO2571
TRAP transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
 
  
 0.870
SPO2572
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.839
SPO2431
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
  
 0.733
SPO1463
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
  
 0.660
SPO2574
Sensor histidine kinase; Identified by similarity to SP:P13799; match to protein family HMM PF02518.
 
     0.638
SPO2605
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
  
 0.627
SPO2575
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
     
 0.548
SPO3663
TRAP dicarboxylate family transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.527
SPO1114
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.499
SPO1456
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
  
    0.491
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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