STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2580Hypothetical protein; Identified by Glimmer2; putative. (122 aa)    
Predicted Functional Partners:
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.881
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.644
SPO2514
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.535
SPO1444
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.488
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.487
SPO2334
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.481
SPO2507
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.454
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.447
SPO3627
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.416
SPO3054
Hypothetical protein; Identified by similarity to GB:CAD71689.1.
  
     0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.