STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2581DNA-binding protein, putative; Identified by match to protein family HMM PF01381. (265 aa)    
Predicted Functional Partners:
SPO2580
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.881
SPO1444
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.712
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.641
SPO3460
Hypothetical protein; Identified by similarity to PIR:E98268.
  
     0.622
SPO3502
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.596
SPO2651
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
    0.593
SPO3716
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.587
SPO2166
Lipoprotein, putative.
  
     0.571
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.571
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.