Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2582Membrane protein, putative. (259 aa)    
Predicted Functional Partners:
SPO2583
Identified by match to protein family HMM PF01425.
       0.682
SPO1765
Hypothetical protein; Identified by similarity to GB:CAE26745.1.
  
     0.650
ccoS
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847.
 
     0.549
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
  
     0.511
SPO3310
Hypothetical protein; Identified by similarity to GB:BAC53154.1.
  
    0.506
SPO2821
Isoprenylcysteine carboxyl methyltransferase family protein; Identified by match to protein family HMM PF04140.
  
     0.499
SPO3521
fixH protein, putative; Identified by similarity to SP:P18397.
 
     0.496
SPO2584
Identified by match to protein family HMM PF00903.
  
    0.473
ccoQ-1
Cytochrome c oxidase, cbb3-type, subunit IV; Identified by similarity to GB:AAB02558.1; match to protein family HMM PF05545.
 
     0.469
SPO3527
Identified by match to protein family HMM PF00582.
  
     0.451
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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