STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2586Type I secretion target repeat protein; Identified by match to protein family HMM PF00353. (663 aa)    
Predicted Functional Partners:
SPO3839
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 0.749
SPO2361
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
 
   0.743
SPO2352
Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.
 
0.698
SPO0362
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
 0.607
SPO0035
Identified by match to protein family HMM PF02485.
  
     0.597
SPO0459
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.568
SPO0037
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
  
  
 0.542
SPO2292
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
 
 
 0.530
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
  
  
 0.518
SPO1263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.515
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.