Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO2590Peptidase, M48 family; Identified by match to protein family HMM PF01435. (449 aa)    
Predicted Functional Partners:
SPO2591
27 kDa outer membrane protein, putative; Identified by similarity to PIR:A49232; match to protein family HMM PF01323.
  
  
 0.846
SPO2589
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.
       0.704
SPO2588
N-acetylmuramoyl-L-alanine amidase, family 3; Identified by match to protein family HMM PF01520.
  
    0.551
SPO2263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.470
SPO0269
Negative transcriptional regulator; Identified by match to protein family HMM PF04299.
  
     0.460
SPO3811
Hypothetical protein; Identified by similarity to GB:AAK25396.1.
   
   0.437
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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