STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2602Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418. (290 aa)    
Predicted Functional Partners:
SPO2603
Identified by match to protein family HMM PF05013.
 
  
 0.897
SPO2604
Hypothetical protein; Identified by similarity to GB:BAB51666.1.
 
     0.880
SPO2605
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
     0.838
SPO2606
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
 
     0.831
SPO2609
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
 
   
 0.752
SPO2608
Aldehyde dehydrogenase, putative; Identified by similarity to GB:CAC81341.1; match to protein family HMM PF00171.
 
    0.748
SPO2607
Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
    0.743
SPO2601
Pirin domain protein; Identified by match to protein family HMM PF02678; match to protein family HMM PF05726; Belongs to the pirin family.
       0.528
SPO1827
N-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013.
 
  
 0.454
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
  
 0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.