STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2608Aldehyde dehydrogenase, putative; Identified by similarity to GB:CAC81341.1; match to protein family HMM PF00171. (458 aa)    
Predicted Functional Partners:
SPO2609
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
 
 0.964
SPO2607
Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.879
SPO2604
Hypothetical protein; Identified by similarity to GB:BAB51666.1.
 
     0.823
SPO2606
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
 
     0.811
SPO2605
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
     0.771
SPO2603
Identified by match to protein family HMM PF05013.
 
     0.763
SPO2602
Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
 
    0.748
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.681
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.536
SPO2610
Hypothetical protein; Identified by similarity to GB:CAD17488.1.
       0.524
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.