STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2609Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465. (381 aa)    
Predicted Functional Partners:
SPO2608
Aldehyde dehydrogenase, putative; Identified by similarity to GB:CAC81341.1; match to protein family HMM PF00171.
 
 0.969
SPO1889
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
  
 
 0.864
SPO2607
Gamma-glutamylisopropylamide synthetase, putative; Identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
   
 0.857
SPO3850
Glutathione-dependent formaldehyde dehydrogenase; Identified by similarity to SP:P45382; match to protein family HMM PF00107; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
 0.850
SPO2606
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
 
    0.784
SPO2604
Hypothetical protein; Identified by similarity to GB:BAB51666.1.
 
   
 0.774
SPO2602
Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
 
   
 0.751
SPO2605
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808.
 
   
 0.735
SPO2603
Identified by match to protein family HMM PF05013.
 
   
 0.702
paaZ
Phenylacetic acid degradation protein PaaZ; Identified by similarity to SP:P77455; match to protein family HMM PF00171; match to protein family HMM PF01575.
  
 
 0.647
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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