STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2612DNA-binding protein HU, putative. (164 aa)    
Predicted Functional Partners:
SPO3182
Hypothetical protein; Identified by similarity to PIR:T03518.
  
   
 0.754
SPO2521
Lipoprotein, putative.
  
     0.722
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
   
 0.711
SPO0915
Hypothetical protein; Identified by similarity to PIR:AB2631.
  
     0.689
SPO3334
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.683
SPO2828
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
  
   
 0.666
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.635
SPO1034
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.619
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.613
SPO1626
Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.612
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.