Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO2620Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family. (124 aa)    
Predicted Functional Partners:
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
 
 
 0.939
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
 
 0.915
SPO2025
Iron-sulfur cluster assembly transcription factor IscR, putative; Identified by similarity to GB:AAN17744.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738.
 
  
 0.864
SPO1348
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.
 
 0.786
SPO1246
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
 
 
 0.780
SPO0766
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00111.
  
 0.748
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.747
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
   
 0.746
SPO1868
Identified by match to protein family HMM TIGR00365; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.730
SPO1108
DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226.
  
 
 0.682
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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